Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 PPT1-215ENST00000641471 2368 ntBASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
ATG4AQ8WYN0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 AC092850.2-201ENST00000623821 2697 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 MRPL3P1-201ENST00000400109 1033 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 AC093724.1-201ENST00000448659 1027 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 HCG4B-203ENST00000450128 991 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ATG4AQ8WYN0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 RNA5SP419-201ENST00000515908 135 ntBASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.88■□□□□ 0.29
ATG4AQ8WYN0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms