Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 MIR658-201ENST00000385210 100 ntBASIC16.25■□□□□ 0.19
HMGB4Q8WW32 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 TIMM17BP1-201ENST00000545713 516 ntBASIC16.25■□□□□ 0.19
HMGB4Q8WW32 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AC093726.1-201ENST00000608064 963 ntBASIC16.25■□□□□ 0.19
HMGB4Q8WW32 AC099568.2-201ENST00000609194 695 ntBASIC16.25■□□□□ 0.19
HMGB4Q8WW32 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB4Q8WW32 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 AC098850.1-201ENST00000419919 790 ntBASIC16.24■□□□□ 0.19
HMGB4Q8WW32 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.24■□□□□ 0.19
HMGB4Q8WW32 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB4Q8WW32 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms