Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PRSS29P-201ENST00000440800 595 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 VN2R19P-201ENST00000442399 1052 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AC009947.1-201ENST00000444350 727 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AC144831.1-201ENST00000573312 2656 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AL592424.1-201ENST00000563624 1536 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 AC021097.1-201ENST00000607902 574 ntBASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLHC1Q8NHS4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 AP005117.1-202ENST00000581724 1908 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 AC069224.1-201ENST00000566372 1715 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 FAAHP1-202ENST00000446499 1238 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 RNA5SP415-201ENST00000517246 115 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 AL031432.2-201ENST00000566714 459 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 AL928711.1-201ENST00000570165 459 ntBASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.66■□□□□ 0.1
CLHC1Q8NHS4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms