Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SKA3Q8IX90 AC063926.3-201ENST00000624734 5658 ntBASIC14.46□□□□□ -0.1
SKA3Q8IX90 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.46□□□□□ -0.1
SKA3Q8IX90 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AC006449.5-201ENST00000610658 2098 ntBASIC14.45□□□□□ -0.1
SKA3Q8IX90 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AL355306.1-201ENST00000415580 579 ntBASIC14.45□□□□□ -0.1
SKA3Q8IX90 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 POU5F1P6-201ENST00000466990 990 ntBASIC14.45□□□□□ -0.1
SKA3Q8IX90 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AC010327.4-202ENST00000591484 748 ntBASIC14.45□□□□□ -0.1
SKA3Q8IX90 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AC007950.2-201ENST00000615045 2347 ntBASIC14.45□□□□□ -0.1
SKA3Q8IX90 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SKA3Q8IX90 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SKA3Q8IX90 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC005622.1-201ENST00000636801 1703 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 TFAMP1-201ENST00000412727 736 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 ACTG1P14-201ENST00000446382 1122 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC092865.5-201ENST00000545435 363 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 MIR3687-2-201ENST00000577708 61 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 MIR3687-1-201ENST00000614492 61 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC105917.1-201ENST00000506637 2539 ntBASIC14.44□□□□□ -0.1
SKA3Q8IX90 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SKA3Q8IX90 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SKA3Q8IX90 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms