Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 AHRR-211ENST00000515206 462 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NPHP3Q7Z494 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 GRN-222ENST00000639447 1314 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AC007969.1-201ENST00000433675 447 ntBASIC21.75■■□□□ 1.07
NPHP3Q7Z494 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 NEU3-202ENST00000526068 431 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 ACTG1P17-201ENST00000558391 1119 ntBASIC21.75■■□□□ 1.07
NPHP3Q7Z494 KLK3-211ENST00000597483 810 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AC015967.2-201ENST00000624092 234 ntBASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AC006435.4-201ENST00000625037 234 ntBASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AL356737.1-201ENST00000634391 234 ntBASIC21.75■■□□□ 1.07
NPHP3Q7Z494 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP3Q7Z494 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AGER-206ENST00000375070 1463 ntTSL 5 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 ACKR1-201ENST00000368121 1240 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AL591846.1-201ENST00000451736 433 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AKR7A2P1-201ENST00000460134 915 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AC079328.1-201ENST00000560358 952 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AC025279.2-201ENST00000569730 653 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 AC005695.3-201ENST00000614522 232 ntBASIC21.74■■□□□ 1.07
NPHP3Q7Z494 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP3Q7Z494 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 MIR663B-201ENST00000408361 115 ntBASIC21.73■■□□□ 1.07
NPHP3Q7Z494 AC091804.1-201ENST00000486888 567 ntBASIC21.73■■□□□ 1.07
NPHP3Q7Z494 SCARNA20.5-201ENST00000516991 142 ntBASIC21.73■■□□□ 1.07
NPHP3Q7Z494 KC6-205ENST00000599934 556 ntTSL 4 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHP3Q7Z494 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHP3Q7Z494 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms