Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 AL592309.1-201ENST00000443127 649 ntBASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 MTHFR-217ENST00000641820 1569 ntBASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC211486.1-202ENST00000416371 468 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC211476.1-201ENST00000503899 468 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 KRT8P23-201ENST00000560090 1207 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC073389.1-201ENST00000595595 795 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 AC105339.1-204ENST00000636249 355 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 PCDHA1-201ENST00000378133 2726 ntBASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE3Q6ZMZ3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SPCS2P4-201ENST00000436160 681 ntBASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE3Q6ZMZ3 SPTSSB-204ENST00000617024 1292 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms