Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 KRT8P12-202ENST00000472924 1397 ntBASIC16.64■□□□□ 0.25
SLC6A4P31645 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.63■□□□□ 0.25
SLC6A4P31645 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SLC6A4P31645 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
SLC6A4P31645 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.63■□□□□ 0.25
SLC6A4P31645 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 AC245100.5-201ENST00000452108 331 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 AC009477.1-201ENST00000452936 217 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 AL512361.1-201ENST00000554200 418 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 MIR4745-201ENST00000577608 62 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.63■□□□□ 0.25
SLC6A4P31645 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 AC087499.5-201ENST00000452760 1342 ntBASIC16.63■□□□□ 0.25
SLC6A4P31645 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC6A4P31645 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.63■□□□□ 0.25
SLC6A4P31645 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SLC6A4P31645 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC6A4P31645 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 AL691432.1-201ENST00000596308 1422 ntBASIC16.62■□□□□ 0.25
SLC6A4P31645 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.62■□□□□ 0.25
SLC6A4P31645 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 AC009407.1-201ENST00000568958 598 ntBASIC16.62■□□□□ 0.25
SLC6A4P31645 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.62■□□□□ 0.25
SLC6A4P31645 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 MIR3197-201ENST00000582241 73 ntBASIC16.62■□□□□ 0.25
SLC6A4P31645 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SLC6A4P31645 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 AC099398.1-201ENST00000567919 2776 ntBASIC16.62■□□□□ 0.25
SLC6A4P31645 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.62■□□□□ 0.25
SLC6A4P31645 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC6A4P31645 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.61■□□□□ 0.25
SLC6A4P31645 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SLC6A4P31645 AC022144.1-201ENST00000602255 1580 ntBASIC16.61■□□□□ 0.25
SLC6A4P31645 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms