Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR6069-201ENST00000620069 79 ntBASIC18.57■□□□□ 0.56
SMARCA1P28370 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SMARCA1P28370 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.56■□□□□ 0.56
SMARCA1P28370 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.56■□□□□ 0.56
SMARCA1P28370 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.56■□□□□ 0.56
SMARCA1P28370 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.56■□□□□ 0.56
SMARCA1P28370 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.56■□□□□ 0.56
SMARCA1P28370 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCA1P28370 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 PKD1P1-201ENST00000458669 6805 ntBASIC18.56■□□□□ 0.56
SMARCA1P28370 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCA1P28370 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 IGHV3-42-201ENST00000520410 361 ntBASIC18.55■□□□□ 0.56
SMARCA1P28370 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.55■□□□□ 0.56
SMARCA1P28370 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.55■□□□□ 0.56
SMARCA1P28370 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 AL096865.1-201ENST00000606796 927 ntBASIC18.55■□□□□ 0.56
SMARCA1P28370 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 AC134407.2-201ENST00000625089 1978 ntBASIC18.55■□□□□ 0.56
SMARCA1P28370 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SMARCA1P28370 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SMARCA1P28370 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMARCA1P28370 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 AL513523.2-202ENST00000427283 2040 ntBASIC18.54■□□□□ 0.56
SMARCA1P28370 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.54■□□□□ 0.56
SMARCA1P28370 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.54■□□□□ 0.56
SMARCA1P28370 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SMARCA1P28370 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMARCA1P28370 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms