Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AC004987.2-201ENST00000395959 1148 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AC244107.1-201ENST00000442033 332 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AC055876.2-201ENST00000531834 546 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 TPRX2P-201ENST00000535362 881 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 AC243562.2-201ENST00000561247 970 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 ARL16-202ENST00000570561 768 ntTSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 AC074044.1-201ENST00000609673 707 ntBASIC19.07■□□□□ 0.64
HLA-DOAP06340 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DOAP06340 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
HLA-DOAP06340 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 AC098614.1-201ENST00000368528 745 ntBASIC19.06■□□□□ 0.64
HLA-DOAP06340 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 MEP1AP4-201ENST00000423244 1087 ntBASIC19.06■□□□□ 0.64
HLA-DOAP06340 KRT17P7-201ENST00000451704 1104 ntBASIC19.06■□□□□ 0.64
HLA-DOAP06340 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 AL691432.1-201ENST00000596308 1422 ntBASIC19.06■□□□□ 0.64
HLA-DOAP06340 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DOAP06340 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HLA-DOAP06340 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DOAP06340 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 HIST3H2BA-201ENST00000436555 524 ntBASIC19.05■□□□□ 0.64
HLA-DOAP06340 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.05■□□□□ 0.64
HLA-DOAP06340 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms