Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LDB3O75112 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LDB3O75112 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LDB3O75112 MTHFR-217ENST00000641820 1569 ntBASIC15.32■□□□□ 0.04
LDB3O75112 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.32■□□□□ 0.04
LDB3O75112 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.32■□□□□ 0.04
LDB3O75112 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.32■□□□□ 0.04
LDB3O75112 RNA5SP410-201ENST00000516285 106 ntBASIC15.32■□□□□ 0.04
LDB3O75112 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
LDB3O75112 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.32■□□□□ 0.04
LDB3O75112 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 AC009093.7-201ENST00000623853 1223 ntBASIC15.32■□□□□ 0.04
LDB3O75112 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.32■□□□□ 0.04
LDB3O75112 AP3S2-216ENST00000617003 1561 ntBASIC15.32■□□□□ 0.04
LDB3O75112 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LDB3O75112 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.32■□□□□ 0.04
LDB3O75112 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 AC018695.7-201ENST00000624587 2492 ntBASIC15.31■□□□□ 0.04
LDB3O75112 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 GPS2P2-201ENST00000430745 888 ntBASIC15.31■□□□□ 0.04
LDB3O75112 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
LDB3O75112 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
LDB3O75112 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.31■□□□□ 0.04
LDB3O75112 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.31■□□□□ 0.04
LDB3O75112 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LDB3O75112 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LDB3O75112 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.3■□□□□ 0.04
LDB3O75112 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LDB3O75112 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms