Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.78■□□□□ 0.44
CLDN3O15551 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN3O15551 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN3O15551 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN3O15551 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 AC092364.2-201ENST00000596710 2692 ntBASIC17.77■□□□□ 0.44
CLDN3O15551 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CLDN3O15551 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLDN3O15551 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.77■□□□□ 0.44
CLDN3O15551 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.77■□□□□ 0.44
CLDN3O15551 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CLDN3O15551 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CLDN3O15551 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.77■□□□□ 0.44
CLDN3O15551 CYMP-203ENST00000474680 1263 ntBASIC17.77■□□□□ 0.44
CLDN3O15551 AC125807.1-201ENST00000483097 614 ntBASIC17.77■□□□□ 0.44
CLDN3O15551 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.77■□□□□ 0.44
CLDN3O15551 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN3O15551 AC007967.4-201ENST00000614700 386 ntBASIC17.77■□□□□ 0.44
CLDN3O15551 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.77■□□□□ 0.44
CLDN3O15551 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
CLDN3O15551 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLDN3O15551 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
CLDN3O15551 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLDN3O15551 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLDN3O15551 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CLDN3O15551 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLDN3O15551 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.77■□□□□ 0.43
CLDN3O15551 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CLDN3O15551 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CLDN3O15551 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLDN3O15551 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
CLDN3O15551 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CLDN3O15551 AC008894.3-201ENST00000624324 3103 ntBASIC17.76■□□□□ 0.43
CLDN3O15551 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.76■□□□□ 0.43
CLDN3O15551 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.76■□□□□ 0.43
CLDN3O15551 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.76■□□□□ 0.43
CLDN3O15551 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CLDN3O15551 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 AC093512.1-201ENST00000617969 520 ntBASIC17.76■□□□□ 0.43
CLDN3O15551 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.76■□□□□ 0.43
CLDN3O15551 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.76■□□□□ 0.43
CLDN3O15551 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
CLDN3O15551 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLDN3O15551 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.75■□□□□ 0.43
CLDN3O15551 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLDN3O15551 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.75■□□□□ 0.43
CLDN3O15551 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLDN3O15551 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.75■□□□□ 0.43
CLDN3O15551 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLDN3O15551 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms