Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 AC112504.1-201ENST00000623415 1841 ntBASIC13.92□□□□□ -0.18
SDCBPO00560 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SDCBPO00560 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 AL136379.1-201ENST00000623471 2642 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SDCBPO00560 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.91□□□□□ -0.18
SDCBPO00560 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.91□□□□□ -0.18
SDCBPO00560 RPS15P9-201ENST00000494093 319 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.91□□□□□ -0.18
SDCBPO00560 AC136632.2-201ENST00000512891 861 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 MIR4492-201ENST00000581627 80 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 MPDU1-223ENST00000582151 728 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.91□□□□□ -0.18
SDCBPO00560 AL121912.1-201ENST00000603683 238 ntBASIC13.91□□□□□ -0.18
SDCBPO00560 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SDCBPO00560 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.91□□□□□ -0.18
SDCBPO00560 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.91□□□□□ -0.18
SDCBPO00560 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SDCBPO00560 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.9□□□□□ -0.18
SDCBPO00560 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 AL365209.1-201ENST00000624418 6473 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
SDCBPO00560 RPS2P28-201ENST00000314255 741 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.9□□□□□ -0.18
SDCBPO00560 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.9□□□□□ -0.18
SDCBPO00560 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 DUSP5P1-201ENST00000441325 1139 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.9□□□□□ -0.18
SDCBPO00560 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.9□□□□□ -0.18
SDCBPO00560 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 GGTLC5P-201ENST00000617623 998 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 TP73-AS1-207ENST00000624167 988 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 GPAA1P2-202ENST00000606848 1787 ntBASIC13.9□□□□□ -0.18
SDCBPO00560 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.9□□□□□ -0.18
SDCBPO00560 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SDCBPO00560 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SDCBPO00560 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms