Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 AL358472.5-202ENST00000641448 1267 ntBASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CYP2T1P-202ENST00000641596 2535 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC236430.1-201ENST00000402231 743 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 RN7SL204P-201ENST00000582831 262 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 AL390754.1-201ENST00000619088 582 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC092364.2-201ENST00000596710 2692 ntBASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.04■□□□□ 0.16
TMX2-CTNND1H3BSU7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC131009.4-201ENST00000624048 1740 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC015922.1-201ENST00000421102 1152 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC105233.2-201ENST00000523697 349 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AF228730.5-201ENST00000530288 346 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 MPDU1-223ENST00000582151 728 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC008761.3-201ENST00000624803 892 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC078925.2-201ENST00000624013 1973 ntBASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TMX2-CTNND1H3BSU7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms