Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 AC067863.1-201ENST00000494933 530 ntBASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A3BPQ9Y5P4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 AC093724.1-201ENST00000448659 1027 ntBASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 PCDHA1-201ENST00000378133 2726 ntBASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A3BPQ9Y5P4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 U82695.1-201ENST00000635752 1889 ntBASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 FOXO1B-201ENST00000504678 1527 ntBASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 TUBB3P1-201ENST00000405796 1332 ntBASIC18.21■□□□□ 0.51
COL4A3BPQ9Y5P4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL4A3BPQ9Y5P4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 REXO1L8P-201ENST00000604378 1897 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms