Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CLCF1Q9UBD9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLCF1Q9UBD9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLCF1Q9UBD9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
CLCF1Q9UBD9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.1
CLCF1Q9UBD9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLCF1Q9UBD9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 LINC02560-201ENST00000596379 459 ntBASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 AC008761.3-201ENST00000624803 892 ntBASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLCF1Q9UBD9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SPDYE17-201ENST00000412399 783 ntBASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AL139010.1-201ENST00000454878 894 ntBASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms