Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.16■□□□□ 0.18
TTC28Q96AY4 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC132938.4-201ENST00000623835 848 ntBASIC16.16■□□□□ 0.18
TTC28Q96AY4 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC233280.19-201ENST00000633223 136 ntBASIC16.16■□□□□ 0.18
TTC28Q96AY4 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC135050.7-201ENST00000624508 2218 ntBASIC16.16■□□□□ 0.18
TTC28Q96AY4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TTC28Q96AY4 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 SAMD11P1-201ENST00000571429 661 ntBASIC16.16■□□□□ 0.18
TTC28Q96AY4 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 HKR1-225ENST00000592168 566 ntTSL 4 BASIC16.16■□□□□ 0.18
TTC28Q96AY4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 IGHV3-37-201ENST00000518544 340 ntBASIC16.15■□□□□ 0.18
TTC28Q96AY4 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.15■□□□□ 0.18
TTC28Q96AY4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TTC28Q96AY4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
TTC28Q96AY4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
TTC28Q96AY4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
TTC28Q96AY4 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TTC28Q96AY4 AC105137.3-201ENST00000617588 984 ntBASIC16.14■□□□□ 0.18
TTC28Q96AY4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.18
TTC28Q96AY4 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TTC28Q96AY4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TTC28Q96AY4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TTC28Q96AY4 DPM3-202ENST00000368399 517 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms