Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HIST3H2BA-201ENST00000436555 524 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 RN7SL818P-201ENST00000485099 259 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 AP001063.1-201ENST00000568332 529 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 LINC01115-203ENST00000606068 577 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 RN7SL725P-201ENST00000606439 259 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 LTB4R2-202ENST00000528054 3092 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 MSTO2P-201ENST00000314835 1709 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 MTX1P1-201ENST00000440904 838 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 AL133466.1-201ENST00000447582 150 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 MIR4741-201ENST00000579822 90 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 AP003419.4-201ENST00000616071 517 ntBASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SMC1BQ8NDV3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMC1BQ8NDV3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
SMC1BQ8NDV3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.14■□□□□ 0.66
SMC1BQ8NDV3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SMC1BQ8NDV3 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 C1QBPP1-201ENST00000400117 770 ntBASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 AC093433.1-201ENST00000458048 571 ntBASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 FTLP10-202ENST00000505798 471 ntBASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SMC1BQ8NDV3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 AC135050.7-201ENST00000624508 2218 ntBASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.13■□□□□ 0.65
SMC1BQ8NDV3 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms