Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FLII-221ENST00000578558 2377 ntTSL 5 BASIC21.23■□□□□ 0.99
USP54Q70EL1 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.23■□□□□ 0.99
USP54Q70EL1 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
USP54Q70EL1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 GUK1-206ENST00000366723 845 ntTSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 ACTBP8-201ENST00000403258 1108 ntBASIC21.22■□□□□ 0.99
USP54Q70EL1 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
USP54Q70EL1 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP54Q70EL1 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
USP54Q70EL1 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
USP54Q70EL1 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
USP54Q70EL1 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
USP54Q70EL1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP54Q70EL1 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
USP54Q70EL1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP54Q70EL1 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC21.21■□□□□ 0.99
USP54Q70EL1 FAM86HP-204ENST00000513466 959 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP54Q70EL1 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC21.21■□□□□ 0.99
USP54Q70EL1 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC21.21■□□□□ 0.99
USP54Q70EL1 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC21.21■□□□□ 0.99
USP54Q70EL1 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.21■□□□□ 0.99
USP54Q70EL1 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC106886.4-201ENST00000623557 2502 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
USP54Q70EL1 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC245100.3-201ENST00000441281 285 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC21.21■□□□□ 0.99
USP54Q70EL1 BCRP2-202ENST00000447763 634 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC093433.1-201ENST00000458048 571 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 BCRP6-201ENST00000510112 632 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 BCRP7-201ENST00000511549 544 ntBASIC21.21■□□□□ 0.99
USP54Q70EL1 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC21.21■□□□□ 0.99
USP54Q70EL1 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.21■□□□□ 0.99
USP54Q70EL1 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP54Q70EL1 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
USP54Q70EL1 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USP54Q70EL1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC21.2■□□□□ 0.98
USP54Q70EL1 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.2■□□□□ 0.98
USP54Q70EL1 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC21.2■□□□□ 0.98
USP54Q70EL1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.2■□□□□ 0.98
USP54Q70EL1 ZBTB12BP-201ENST00000314232 1122 ntBASIC21.2■□□□□ 0.98
USP54Q70EL1 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC21.2■□□□□ 0.98
USP54Q70EL1 NOP2-211ENST00000540228 668 ntTSL 2 BASIC21.2■□□□□ 0.98
USP54Q70EL1 AC079316.1-201ENST00000548397 411 ntBASIC21.2■□□□□ 0.98
USP54Q70EL1 MIR4538-201ENST00000581377 78 ntBASIC21.2■□□□□ 0.98
USP54Q70EL1 PFAS-212ENST00000625942 396 ntTSL 5 BASIC21.2■□□□□ 0.98
USP54Q70EL1 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.2■□□□□ 0.98
USP54Q70EL1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.2■□□□□ 0.98
USP54Q70EL1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP54Q70EL1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP54Q70EL1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms