Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 AC008267.7-201ENST00000624570 1194 ntBASIC19.68■□□□□ 0.74
VPS53Q5VIR6 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
VPS53Q5VIR6 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 MIR346-201ENST00000362234 95 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC142381.1-201ENST00000426099 345 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 POU5F1P6-201ENST00000466990 990 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AP000842.3-202ENST00000569238 1080 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC073389.1-201ENST00000595595 795 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AP001160.2-201ENST00000596071 487 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VPS53Q5VIR6 REXO1L8P-201ENST00000604378 1897 ntBASIC19.67■□□□□ 0.74
VPS53Q5VIR6 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AC254562.1-201ENST00000417586 456 ntBASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CNN2P11-201ENST00000429351 262 ntBASIC19.66■□□□□ 0.74
VPS53Q5VIR6 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AP000344.2-201ENST00000512987 629 ntBASIC19.66■□□□□ 0.74
VPS53Q5VIR6 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS53Q5VIR6 AC006449.6-201ENST00000612330 2296 ntBASIC19.65■□□□□ 0.74
VPS53Q5VIR6 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms