Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCNA1P78396 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CCNA1P78396 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.39■□□□□ 0.53
CCNA1P78396 AL442647.2-201ENST00000429864 857 ntBASIC18.39■□□□□ 0.53
CCNA1P78396 AL162726.2-201ENST00000438986 1017 ntBASIC18.39■□□□□ 0.53
CCNA1P78396 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCNA1P78396 AC119751.2-201ENST00000504529 210 ntBASIC18.39■□□□□ 0.53
CCNA1P78396 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCNA1P78396 AC243562.2-201ENST00000561247 970 ntBASIC18.39■□□□□ 0.53
CCNA1P78396 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.39■□□□□ 0.53
CCNA1P78396 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CCNA1P78396 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.39■□□□□ 0.53
CCNA1P78396 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNA1P78396 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
CCNA1P78396 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCNA1P78396 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNA1P78396 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNA1P78396 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 POU5F1P6-201ENST00000466990 990 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.38■□□□□ 0.53
CCNA1P78396 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.38■□□□□ 0.53
CCNA1P78396 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 AC233724.13-201ENST00000598383 410 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 AC133539.2-201ENST00000604757 467 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 AL033527.4-201ENST00000641026 673 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 KRT8P22-201ENST00000562317 1415 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 AL691432.1-201ENST00000596308 1422 ntBASIC18.38■□□□□ 0.53
CCNA1P78396 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNA1P78396 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNA1P78396 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNA1P78396 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CCNA1P78396 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 AC245100.5-201ENST00000452108 331 ntBASIC18.37■□□□□ 0.53
CCNA1P78396 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.37■□□□□ 0.53
CCNA1P78396 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CCNA1P78396 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
CCNA1P78396 LINC01115-203ENST00000606068 577 ntBASIC18.37■□□□□ 0.53
CCNA1P78396 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.37■□□□□ 0.53
CCNA1P78396 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCNA1P78396 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNA1P78396 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNA1P78396 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.37■□□□□ 0.53
CCNA1P78396 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CCNA1P78396 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CCNA1P78396 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.36■□□□□ 0.53
CCNA1P78396 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCNA1P78396 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCNA1P78396 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms