Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXA1P55317 AL450487.1-201ENST00000426799 995 ntBASIC15.78■□□□□ 0.12
FOXA1P55317 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXA1P55317 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 AC109635.5-201ENST00000533593 962 ntBASIC15.78■□□□□ 0.12
FOXA1P55317 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXA1P55317 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXA1P55317 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA1P55317 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 AP002414.2-201ENST00000591780 3365 ntBASIC15.78■□□□□ 0.12
FOXA1P55317 AC023824.1-201ENST00000562945 2975 ntBASIC15.78■□□□□ 0.12
FOXA1P55317 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
FOXA1P55317 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA1P55317 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
FOXA1P55317 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.77■□□□□ 0.12
FOXA1P55317 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.12
FOXA1P55317 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXA1P55317 AC092474.2-201ENST00000424288 719 ntBASIC15.77■□□□□ 0.12
FOXA1P55317 FAAHP1-202ENST00000446499 1238 ntBASIC15.77■□□□□ 0.12
FOXA1P55317 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.77■□□□□ 0.12
FOXA1P55317 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.77■□□□□ 0.12
FOXA1P55317 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXA1P55317 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.77■□□□□ 0.12
FOXA1P55317 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXA1P55317 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.77■□□□□ 0.12
FOXA1P55317 SLC25A6P4-201ENST00000586535 553 ntBASIC15.77■□□□□ 0.12
FOXA1P55317 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA1P55317 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.77■□□□□ 0.12
FOXA1P55317 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA1P55317 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms