Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.47■□□□□ 0.39
VCPP55072 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCPP55072 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.46■□□□□ 0.39
VCPP55072 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 AC013467.2-201ENST00000605472 835 ntBASIC17.46■□□□□ 0.39
VCPP55072 MIR6080-201ENST00000617359 66 ntBASIC17.46■□□□□ 0.39
VCPP55072 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 AC092364.2-201ENST00000596710 2692 ntBASIC17.46■□□□□ 0.39
VCPP55072 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VCPP55072 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCPP55072 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VCPP55072 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VCPP55072 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
VCPP55072 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
VCPP55072 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
VCPP55072 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VCPP55072 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
VCPP55072 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 AC241585.1-201ENST00000433527 519 ntBASIC17.45■□□□□ 0.38
VCPP55072 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.45■□□□□ 0.38
VCPP55072 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.45■□□□□ 0.38
VCPP55072 RARRES2P8-201ENST00000566335 367 ntBASIC17.45■□□□□ 0.38
VCPP55072 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VCPP55072 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 AC006277.1-201ENST00000624348 1610 ntBASIC17.45■□□□□ 0.38
VCPP55072 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 UXT-AS1-201ENST00000590504 1525 ntBASIC17.45■□□□□ 0.38
VCPP55072 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
VCPP55072 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCPP55072 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.45■□□□□ 0.38
VCPP55072 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.45■□□□□ 0.38
VCPP55072 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.44■□□□□ 0.38
VCPP55072 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCPP55072 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms