Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN4P29074 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN4P29074 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
PTPN4P29074 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 AC109462.3-201ENST00000573934 613 ntBASIC16.44■□□□□ 0.22
PTPN4P29074 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.44■□□□□ 0.22
PTPN4P29074 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN4P29074 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTPN4P29074 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN4P29074 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 AC006504.4-201ENST00000592118 1568 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 PKD1P5-201ENST00000532415 10291 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 ELK2BP-201ENST00000415014 1224 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 AC023274.1-201ENST00000418278 595 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN4P29074 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.43■□□□□ 0.22
PTPN4P29074 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 MTDHP5-201ENST00000598980 586 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 AC079781.4-201ENST00000641908 219 ntBASIC16.43■□□□□ 0.22
PTPN4P29074 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTPN4P29074 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN4P29074 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN4P29074 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN4P29074 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.42■□□□□ 0.22
PTPN4P29074 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTPN4P29074 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTPN4P29074 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms