Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL8A1P27658 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL8A1P27658 KRT8P12-202ENST00000472924 1397 ntBASIC14.2□□□□□ -0.14
COL8A1P27658 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.19□□□□□ -0.14
COL8A1P27658 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.19□□□□□ -0.14
COL8A1P27658 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.19□□□□□ -0.14
COL8A1P27658 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.19□□□□□ -0.14
COL8A1P27658 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 AL022328.1-201ENST00000610050 478 ntBASIC14.19□□□□□ -0.14
COL8A1P27658 AC091271.1-201ENST00000611877 1162 ntBASIC14.19□□□□□ -0.14
COL8A1P27658 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.19□□□□□ -0.14
COL8A1P27658 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL8A1P27658 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC14.19□□□□□ -0.14
COL8A1P27658 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.18□□□□□ -0.14
COL8A1P27658 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 EGFEM1P-202ENST00000431685 1563 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.18□□□□□ -0.14
COL8A1P27658 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.18□□□□□ -0.14
COL8A1P27658 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.18□□□□□ -0.14
COL8A1P27658 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.18□□□□□ -0.14
COL8A1P27658 MPRIPP1-201ENST00000452433 1089 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 KRT8P13-201ENST00000463294 1010 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.18□□□□□ -0.14
COL8A1P27658 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.18□□□□□ -0.14
COL8A1P27658 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.18□□□□□ -0.14
COL8A1P27658 AC106872.11-201ENST00000605838 421 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 AL365330.1-201ENST00000607459 531 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 LINC01451-201ENST00000623792 534 ntBASIC14.18□□□□□ -0.14
COL8A1P27658 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL8A1P27658 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms