Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.08■□□□□ 0.81
COL5A3P25940 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 CNN2P10-201ENST00000443067 918 ntBASIC20.08■□□□□ 0.81
COL5A3P25940 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 AC091804.1-201ENST00000486888 567 ntBASIC20.08■□□□□ 0.81
COL5A3P25940 AC078819.1-201ENST00000547454 765 ntBASIC20.08■□□□□ 0.81
COL5A3P25940 AC012085.1-201ENST00000548270 765 ntBASIC20.08■□□□□ 0.81
COL5A3P25940 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
COL5A3P25940 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.08■□□□□ 0.81
COL5A3P25940 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A3P25940 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.08■□□□□ 0.8
COL5A3P25940 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
COL5A3P25940 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A3P25940 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC20.07■□□□□ 0.8
COL5A3P25940 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.07■□□□□ 0.8
COL5A3P25940 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.07■□□□□ 0.8
COL5A3P25940 AL021578.1-201ENST00000613646 709 ntBASIC20.07■□□□□ 0.8
COL5A3P25940 AC138951.2-201ENST00000623455 1161 ntBASIC20.07■□□□□ 0.8
COL5A3P25940 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 ACTBP8-201ENST00000403258 1108 ntBASIC20.07■□□□□ 0.8
COL5A3P25940 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.07■□□□□ 0.8
COL5A3P25940 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.07■□□□□ 0.8
COL5A3P25940 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 AL008638.5-201ENST00000623814 1298 ntBASIC20.07■□□□□ 0.8
COL5A3P25940 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
COL5A3P25940 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
COL5A3P25940 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.07■□□□□ 0.8
COL5A3P25940 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL5A3P25940 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL5A3P25940 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.06■□□□□ 0.8
COL5A3P25940 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 ACTG1P17-201ENST00000558391 1119 ntBASIC20.06■□□□□ 0.8
COL5A3P25940 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
COL5A3P25940 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.06■□□□□ 0.8
COL5A3P25940 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.06■□□□□ 0.8
COL5A3P25940 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL5A3P25940 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL5A3P25940 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
COL5A3P25940 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC20.05■□□□□ 0.8
COL5A3P25940 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL5A3P25940 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC20.05■□□□□ 0.8
COL5A3P25940 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
COL5A3P25940 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC20.05■□□□□ 0.8
COL5A3P25940 GPX4-206ENST00000588919 803 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms