Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
COL5A1P20908 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 ENPP7P5-201ENST00000541031 1031 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 KRT90P-201ENST00000549264 1064 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.38■□□□□ 0.05
COL5A1P20908 AL359711.2-201ENST00000563105 872 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.38■□□□□ 0.05
COL5A1P20908 AC244093.1-201ENST00000610837 814 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 AL592424.1-201ENST00000563624 1536 ntBASIC15.37■□□□□ 0.05
COL5A1P20908 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 AC074338.1-201ENST00000416825 156 ntBASIC15.37■□□□□ 0.05
COL5A1P20908 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.37■□□□□ 0.05
COL5A1P20908 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.37■□□□□ 0.05
COL5A1P20908 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.37■□□□□ 0.05
COL5A1P20908 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 RHOXF1P1-202ENST00000635473 501 ntBASIC15.37■□□□□ 0.05
COL5A1P20908 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
COL5A1P20908 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 AC011676.5-201ENST00000624864 2660 ntBASIC15.37■□□□□ 0.05
COL5A1P20908 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL5A1P20908 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.37■□□□□ 0.05
COL5A1P20908 MTHFR-217ENST00000641820 1569 ntBASIC15.37■□□□□ 0.05
COL5A1P20908 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
COL5A1P20908 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
COL5A1P20908 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 SLED1-202ENST00000512051 380 ntBASIC15.36■□□□□ 0.05
COL5A1P20908 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.36■□□□□ 0.05
COL5A1P20908 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC15.36■□□□□ 0.05
COL5A1P20908 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
COL5A1P20908 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
COL5A1P20908 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
COL5A1P20908 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.36■□□□□ 0.05
COL5A1P20908 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL5A1P20908 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms