Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
COL9A1P20849 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.62■□□□□ 0.25
COL9A1P20849 FAU-202ENST00000434372 533 ntTSL 2 BASIC16.62■□□□□ 0.25
COL9A1P20849 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.62■□□□□ 0.25
COL9A1P20849 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.62■□□□□ 0.25
COL9A1P20849 AC004898.1-201ENST00000451057 766 ntBASIC16.62■□□□□ 0.25
COL9A1P20849 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 RNA5SP410-201ENST00000516285 106 ntBASIC16.62■□□□□ 0.25
COL9A1P20849 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.62■□□□□ 0.25
COL9A1P20849 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.62■□□□□ 0.25
COL9A1P20849 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL9A1P20849 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 AL691447.1-201ENST00000419456 387 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 AL133466.1-201ENST00000447582 150 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 AC098859.1-201ENST00000502915 1238 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 RN7SL440P-201ENST00000577855 343 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.61■□□□□ 0.25
COL9A1P20849 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.61■□□□□ 0.25
COL9A1P20849 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 BCL2-203ENST00000589955 5011 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.61■□□□□ 0.25
COL9A1P20849 KRT8P22-201ENST00000562317 1415 ntBASIC16.61■□□□□ 0.25
COL9A1P20849 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL9A1P20849 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL9A1P20849 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.6■□□□□ 0.25
COL9A1P20849 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.6■□□□□ 0.25
COL9A1P20849 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.6■□□□□ 0.25
COL9A1P20849 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.6■□□□□ 0.25
COL9A1P20849 AC141586.1-203ENST00000567242 366 ntBASIC16.6■□□□□ 0.25
COL9A1P20849 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.6■□□□□ 0.25
COL9A1P20849 EEF1DP1-201ENST00000585891 896 ntBASIC16.6■□□□□ 0.25
COL9A1P20849 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 AP003392.6-201ENST00000607709 325 ntBASIC16.6■□□□□ 0.25
COL9A1P20849 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.6■□□□□ 0.25
COL9A1P20849 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.6■□□□□ 0.25
COL9A1P20849 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 AC141586.5-201ENST00000624546 2050 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms