Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGA1P17096 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGA1P17096 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.76■□□□□ 0.27
HMGA1P17096 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 MEP1AP4-201ENST00000423244 1087 ntBASIC16.76■□□□□ 0.27
HMGA1P17096 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGA1P17096 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGA1P17096 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGA1P17096 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGA1P17096 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGA1P17096 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
HMGA1P17096 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
HMGA1P17096 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 AC007431.3-201ENST00000623221 587 ntBASIC16.76■□□□□ 0.27
HMGA1P17096 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGA1P17096 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGA1P17096 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 AC098614.1-201ENST00000368528 745 ntBASIC16.75■□□□□ 0.27
HMGA1P17096 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.75■□□□□ 0.27
HMGA1P17096 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
HMGA1P17096 LINC01115-203ENST00000606068 577 ntBASIC16.75■□□□□ 0.27
HMGA1P17096 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
HMGA1P17096 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.75■□□□□ 0.27
HMGA1P17096 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGA1P17096 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HMGA1P17096 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 AC098850.1-201ENST00000419919 790 ntBASIC16.74■□□□□ 0.27
HMGA1P17096 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
HMGA1P17096 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGA1P17096 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGA1P17096 MEIS3P1-201ENST00000495167 958 ntBASIC16.74■□□□□ 0.27
HMGA1P17096 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGA1P17096 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
HMGA1P17096 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGA1P17096 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGA1P17096 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGA1P17096 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGA1P17096 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGA1P17096 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGA1P17096 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms