Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.55■□□□□ 0.24
VCANP13611 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.55■□□□□ 0.24
VCANP13611 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.55■□□□□ 0.24
VCANP13611 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.55■□□□□ 0.24
VCANP13611 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VCANP13611 AC010234.1-201ENST00000494599 870 ntBASIC16.55■□□□□ 0.24
VCANP13611 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VCANP13611 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.55■□□□□ 0.24
VCANP13611 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.55■□□□□ 0.24
VCANP13611 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 AC120498.9-201ENST00000339021 3867 ntBASIC16.55■□□□□ 0.24
VCANP13611 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
VCANP13611 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.54■□□□□ 0.24
VCANP13611 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.54■□□□□ 0.24
VCANP13611 FAM197Y7-201ENST00000432892 766 ntBASIC16.54■□□□□ 0.24
VCANP13611 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.54■□□□□ 0.24
VCANP13611 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.54■□□□□ 0.24
VCANP13611 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.54■□□□□ 0.24
VCANP13611 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VCANP13611 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 SERPINA13P-202ENST00000478994 924 ntBASIC16.54■□□□□ 0.24
VCANP13611 AL157792.1-201ENST00000488281 530 ntBASIC16.54■□□□□ 0.24
VCANP13611 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VCANP13611 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VCANP13611 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VCANP13611 RPL13P2-201ENST00000440687 659 ntBASIC16.54■□□□□ 0.24
VCANP13611 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.54■□□□□ 0.24
VCANP13611 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VCANP13611 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCANP13611 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.53■□□□□ 0.24
VCANP13611 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.53■□□□□ 0.24
VCANP13611 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.53■□□□□ 0.24
VCANP13611 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VCANP13611 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VCANP13611 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VCANP13611 AC108860.2-201ENST00000562760 2183 ntBASIC16.53■□□□□ 0.24
VCANP13611 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 Z97180.1-201ENST00000445173 988 ntBASIC16.53■□□□□ 0.24
VCANP13611 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VCANP13611 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.53■□□□□ 0.24
VCANP13611 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.53■□□□□ 0.24
VCANP13611 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
VCANP13611 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
VCANP13611 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.53■□□□□ 0.24
VCANP13611 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.53■□□□□ 0.24
VCANP13611 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCANP13611 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.53■□□□□ 0.24
VCANP13611 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms