Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.78■□□□□ 0.12
HOXC4P09017 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 API5-211ENST00000534695 560 ntTSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.78■□□□□ 0.12
HOXC4P09017 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC099568.2-201ENST00000609194 695 ntBASIC15.78■□□□□ 0.12
HOXC4P09017 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC025048.6-201ENST00000634326 1161 ntBASIC15.78■□□□□ 0.12
HOXC4P09017 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.77■□□□□ 0.12
HOXC4P09017 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 SPDYE19P-201ENST00000338590 713 ntBASIC15.77■□□□□ 0.12
HOXC4P09017 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.77■□□□□ 0.12
HOXC4P09017 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.77■□□□□ 0.12
HOXC4P09017 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.77■□□□□ 0.12
HOXC4P09017 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.77■□□□□ 0.12
HOXC4P09017 AC005225.4-201ENST00000557330 545 ntBASIC15.77■□□□□ 0.12
HOXC4P09017 AL132655.2-201ENST00000596276 594 ntBASIC15.77■□□□□ 0.12
HOXC4P09017 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HOXC4P09017 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
HOXC4P09017 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
HOXC4P09017 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.77■□□□□ 0.11
HOXC4P09017 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.77■□□□□ 0.11
HOXC4P09017 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HOXC4P09017 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.77■□□□□ 0.11
HOXC4P09017 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
HOXC4P09017 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HOXC4P09017 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HOXC4P09017 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.77■□□□□ 0.11
HOXC4P09017 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
HOXC4P09017 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HOXC4P09017 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.76■□□□□ 0.11
HOXC4P09017 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
HOXC4P09017 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 AZGP1P1-201ENST00000411909 902 ntBASIC15.76■□□□□ 0.11
HOXC4P09017 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.76■□□□□ 0.11
HOXC4P09017 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 GNAQP1-201ENST00000444815 1067 ntBASIC15.76■□□□□ 0.11
HOXC4P09017 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 SPDYE18-201ENST00000510091 1050 ntBASIC15.76■□□□□ 0.11
HOXC4P09017 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.76■□□□□ 0.11
HOXC4P09017 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.76■□□□□ 0.11
HOXC4P09017 TIMM17BP1-201ENST00000545713 516 ntBASIC15.76■□□□□ 0.11
HOXC4P09017 CR383656.12-201ENST00000549567 513 ntBASIC15.76■□□□□ 0.11
HOXC4P09017 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
HOXC4P09017 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.76■□□□□ 0.11
HOXC4P09017 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HOXC4P09017 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
HOXC4P09017 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HOXC4P09017 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms