Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.38□□□□□ -0.11
LMX1BO60663 AC106028.4-201ENST00000614509 607 ntBASIC14.38□□□□□ -0.11
LMX1BO60663 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
LMX1BO60663 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMX1BO60663 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
LMX1BO60663 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.38□□□□□ -0.11
LMX1BO60663 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.38□□□□□ -0.11
LMX1BO60663 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 MIR770-201ENST00000390219 98 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 MRPL20P1-201ENST00000400819 433 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 FAM8A3P-201ENST00000427218 844 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 AC087641.1-201ENST00000557561 1021 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 AC010654.1-201ENST00000615722 808 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LMX1BO60663 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.37□□□□□ -0.11
LMX1BO60663 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LMX1BO60663 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
LMX1BO60663 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMX1BO60663 PRAL-201ENST00000624952 3286 ntBASIC14.37□□□□□ -0.11
LMX1BO60663 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.36□□□□□ -0.11
LMX1BO60663 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.36□□□□□ -0.11
LMX1BO60663 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.36□□□□□ -0.11
LMX1BO60663 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.36□□□□□ -0.11
LMX1BO60663 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMX1BO60663 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms