Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC25.68■■□□□ 1.7
CHD1O14646 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC25.68■■□□□ 1.7
CHD1O14646 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
CHD1O14646 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC25.68■■□□□ 1.7
CHD1O14646 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC25.68■■□□□ 1.7
CHD1O14646 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD1O14646 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC25.68■■□□□ 1.7
CHD1O14646 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC25.68■■□□□ 1.7
CHD1O14646 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC25.68■■□□□ 1.7
CHD1O14646 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC25.67■■□□□ 1.7
CHD1O14646 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
CHD1O14646 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC25.67■■□□□ 1.7
CHD1O14646 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC25.67■■□□□ 1.7
CHD1O14646 AC098935.1-201ENST00000446057 611 ntBASIC25.67■■□□□ 1.7
CHD1O14646 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC25.67■■□□□ 1.7
CHD1O14646 AP005019.2-201ENST00000615104 511 ntBASIC25.67■■□□□ 1.7
CHD1O14646 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC25.67■■□□□ 1.7
CHD1O14646 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC25.67■■□□□ 1.7
CHD1O14646 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC25.67■■□□□ 1.7
CHD1O14646 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD1O14646 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CHD1O14646 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 RN7SL8P-201ENST00000461771 266 ntBASIC25.66■■□□□ 1.7
CHD1O14646 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC25.66■■□□□ 1.7
CHD1O14646 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
CHD1O14646 COX6A1P2-201ENST00000620597 330 ntBASIC25.66■■□□□ 1.7
CHD1O14646 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC25.66■■□□□ 1.7
CHD1O14646 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC25.66■■□□□ 1.7
CHD1O14646 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CHD1O14646 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC25.66■■□□□ 1.7
CHD1O14646 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC25.66■■□□□ 1.7
CHD1O14646 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
CHD1O14646 PPY2P-201ENST00000582808 702 ntBASIC25.66■■□□□ 1.7
CHD1O14646 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CHD1O14646 AC073352.2-201ENST00000609385 439 ntBASIC25.66■■□□□ 1.7
CHD1O14646 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC25.65■■□□□ 1.7
CHD1O14646 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 AMT-206ENST00000458307 1860 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD1O14646 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD1O14646 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 RAC2-202ENST00000401529 569 ntTSL 4 BASIC25.65■■□□□ 1.7
CHD1O14646 CD8B2-202ENST00000417670 633 ntBASIC25.65■■□□□ 1.7
CHD1O14646 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC25.65■■□□□ 1.7
CHD1O14646 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC25.65■■□□□ 1.7
CHD1O14646 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 AC104581.1-202ENST00000635932 2618 ntBASIC25.65■■□□□ 1.7
CHD1O14646 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CHD1O14646 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC25.65■■□□□ 1.7
CHD1O14646 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD1O14646 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CHD1O14646 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC25.64■■□□□ 1.7
CHD1O14646 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
CHD1O14646 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CHD1O14646 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CHD1O14646 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms