Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL589739.1-201ENST00000607720 493 ntBASIC17.36■□□□□ 0.37
SIX4Q9UIU6 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 MIR770-201ENST00000390219 98 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 SPDYE17-201ENST00000412399 783 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 TEX28P1-201ENST00000613479 1221 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 TEX28P2-201ENST00000617764 1221 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 CETN4P-206ENST00000642099 2168 ntBASIC17.35■□□□□ 0.37
SIX4Q9UIU6 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SIX4Q9UIU6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 MIR648-201ENST00000385046 94 ntBASIC17.34■□□□□ 0.37
SIX4Q9UIU6 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 HAUS4P1-201ENST00000406739 1145 ntBASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 AC027369.6-201ENST00000525520 931 ntBASIC17.34■□□□□ 0.37
SIX4Q9UIU6 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SIX4Q9UIU6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.33■□□□□ 0.37
SIX4Q9UIU6 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SIX4Q9UIU6 TSSK5P-201ENST00000423978 907 ntBASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms