Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 AC007686.3-201ENST00000619017 3487 ntBASIC14.49□□□□□ -0.09
MMP28Q9H239 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MMP28Q9H239 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
MMP28Q9H239 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.49□□□□□ -0.09
MMP28Q9H239 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
MMP28Q9H239 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
MMP28Q9H239 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 AC097374.2-201ENST00000618617 1306 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
MMP28Q9H239 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
MMP28Q9H239 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.48□□□□□ -0.09
MMP28Q9H239 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.48□□□□□ -0.09
MMP28Q9H239 AC096633.1-201ENST00000422446 749 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.48□□□□□ -0.09
MMP28Q9H239 AC092329.2-201ENST00000598402 547 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 Z69720.1-201ENST00000601483 472 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
MMP28Q9H239 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.48□□□□□ -0.09
MMP28Q9H239 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 AC112504.1-201ENST00000623415 1841 ntBASIC14.48□□□□□ -0.09
MMP28Q9H239 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MMP28Q9H239 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.47□□□□□ -0.09
MMP28Q9H239 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 GRK6P1-201ENST00000400595 1711 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 AL845331.1-201ENST00000424978 1190 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 AP002383.4-201ENST00000442518 975 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.47□□□□□ -0.09
MMP28Q9H239 HLA-J-202ENST00000469281 1241 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.47□□□□□ -0.09
MMP28Q9H239 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
MMP28Q9H239 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.47□□□□□ -0.09
MMP28Q9H239 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.47□□□□□ -0.09
MMP28Q9H239 TPSP2-201ENST00000561760 610 ntBASIC14.47□□□□□ -0.09
MMP28Q9H239 PRELID1P1-202ENST00000567272 903 ntBASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms