Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 DGCR5-201ENST00000399539 862 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 SDHAP3-202ENST00000515467 728 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC023310.3-201ENST00000557027 670 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC100756.1-201ENST00000562736 682 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC138749.3-201ENST00000567691 622 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC116165.1-201ENST00000611806 668 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PAAF1Q9BRP4 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AC140912.1-201ENST00000577171 1054 ntBASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AC025048.3-201ENST00000590609 569 ntBASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AC005702.4-201ENST00000618393 416 ntBASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PAAF1Q9BRP4 AL691432.1-201ENST00000596308 1422 ntBASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PAAF1Q9BRP4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 NKILA-202ENST00000614771 2598 ntBASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 DFFBP1-201ENST00000433250 979 ntBASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.26■□□□□ 0.35
PAAF1Q9BRP4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms