Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
CCDC140Q96MF4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 RPSAP43-201ENST00000402237 625 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 UPF3AP3-201ENST00000420996 769 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC069335.1-201ENST00000489972 472 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 IGHV3-62-201ENST00000520057 340 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 LINC01225-203ENST00000563550 1244 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AP000842.3-202ENST00000569238 1080 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC022145.2-201ENST00000598203 171 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AC008741.2-201ENST00000612792 3115 ntBASIC12.62□□□□□ -0.39
CCDC140Q96MF4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.62□□□□□ -0.39
CCDC140Q96MF4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC010491.1-201ENST00000563101 2797 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC245100.5-201ENST00000452108 331 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC098859.1-201ENST00000502915 1238 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 AC092865.5-201ENST00000545435 363 ntBASIC12.61□□□□□ -0.39
CCDC140Q96MF4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.61□□□□□ -0.39
CCDC140Q96MF4 KRT8P23-201ENST00000560090 1207 ntBASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms