Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 LINC01144-201ENST00000626198 1710 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 C20orf181-201ENST00000623918 480 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 AC092902.6-201ENST00000641783 218 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 AC092364.2-201ENST00000596710 2692 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 WASH6P-202ENST00000359512 1437 ntBASIC14.49□□□□□ -0.09
SKA3Q8IX90 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SKA3Q8IX90 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SKA3Q8IX90 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 AL671277.1-201ENST00000429656 993 ntBASIC14.48□□□□□ -0.09
SKA3Q8IX90 KRT18P34-201ENST00000488218 1270 ntBASIC14.48□□□□□ -0.09
SKA3Q8IX90 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
SKA3Q8IX90 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SKA3Q8IX90 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SKA3Q8IX90 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms