Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 AC079316.1-201ENST00000548397 411 ntBASIC11.16□□□□□ -0.62
CSMD3Q7Z407 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 AL391256.1-201ENST00000443260 1855 ntBASIC11.16□□□□□ -0.62
CSMD3Q7Z407 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 HARS-202ENST00000415192 1401 ntTSL 2 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CSMD3Q7Z407 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 DPM2-202ENST00000373110 738 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AL355864.2-201ENST00000447420 863 ntBASIC11.15□□□□□ -0.62
CSMD3Q7Z407 LDHBP1-201ENST00000455730 1119 ntBASIC11.15□□□□□ -0.62
CSMD3Q7Z407 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 OARD1-212ENST00000482515 832 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AC097724.1-201ENST00000609581 426 ntBASIC11.15□□□□□ -0.62
CSMD3Q7Z407 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 BX323043.1-201ENST00000641006 1765 ntBASIC11.15□□□□□ -0.62
CSMD3Q7Z407 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 PTK2-225ENST00000520892 571 ntTSL 4 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CSMD3Q7Z407 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CSMD3Q7Z407 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CSMD3Q7Z407 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.63
CSMD3Q7Z407 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
CSMD3Q7Z407 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC11.15□□□□□ -0.63
CSMD3Q7Z407 TOMM22P5-201ENST00000416399 439 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 AL049840.4-201ENST00000602422 811 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 AL607033.1-201ENST00000623900 1599 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 KLK3-211ENST00000597483 810 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 HCG18-245ENST00000602550 559 ntTSL 4 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 RNF216P1-203ENST00000404404 2427 ntBASIC11.14□□□□□ -0.63
CSMD3Q7Z407 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CSMD3Q7Z407 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms