Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CL1P78423 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CL1P78423 MIR574-201ENST00000385209 96 ntBASIC13.21□□□□□ -0.29
CX3CL1P78423 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 PMS2P4-201ENST00000412466 1052 ntBASIC13.21□□□□□ -0.29
CX3CL1P78423 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CL1P78423 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CL1P78423 KRT18P58-201ENST00000527480 1120 ntBASIC13.21□□□□□ -0.29
CX3CL1P78423 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CL1P78423 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CL1P78423 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.21□□□□□ -0.29
CX3CL1P78423 AL031055.1-201ENST00000606362 631 ntBASIC13.21□□□□□ -0.29
CX3CL1P78423 AC021097.1-201ENST00000607902 574 ntBASIC13.21□□□□□ -0.29
CX3CL1P78423 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.21□□□□□ -0.29
CX3CL1P78423 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CX3CL1P78423 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CX3CL1P78423 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CX3CL1P78423 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.21□□□□□ -0.3
CX3CL1P78423 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.21□□□□□ -0.3
CX3CL1P78423 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CX3CL1P78423 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.21□□□□□ -0.3
CX3CL1P78423 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CX3CL1P78423 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 AL136379.1-201ENST00000623471 2642 ntBASIC13.2□□□□□ -0.3
CX3CL1P78423 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.2□□□□□ -0.3
CX3CL1P78423 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.2□□□□□ -0.3
CX3CL1P78423 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.2□□□□□ -0.3
CX3CL1P78423 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.2□□□□□ -0.3
CX3CL1P78423 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.2□□□□□ -0.3
CX3CL1P78423 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.2□□□□□ -0.3
CX3CL1P78423 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.2□□□□□ -0.3
CX3CL1P78423 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 AL365203.3-201ENST00000609742 2057 ntBASIC13.2□□□□□ -0.3
CX3CL1P78423 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CX3CL1P78423 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CX3CL1P78423 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.2□□□□□ -0.3
CX3CL1P78423 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms