Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC092658.1-201ENST00000505836 891 ntBASIC18.42■□□□□ 0.54
CCNA1P78396 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.42■□□□□ 0.54
CCNA1P78396 BTNL10-201ENST00000595971 695 ntBASIC18.42■□□□□ 0.54
CCNA1P78396 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 AC010319.3-201ENST00000597028 470 ntBASIC18.42■□□□□ 0.54
CCNA1P78396 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCNA1P78396 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCNA1P78396 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCNA1P78396 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.42■□□□□ 0.54
CCNA1P78396 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCNA1P78396 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCNA1P78396 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.42■□□□□ 0.54
CCNA1P78396 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CCNA1P78396 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.41■□□□□ 0.54
CCNA1P78396 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 GGT3P-204ENST00000453783 1664 ntBASIC18.41■□□□□ 0.54
CCNA1P78396 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.41■□□□□ 0.54
CCNA1P78396 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 AC104989.1-201ENST00000519711 778 ntBASIC18.41■□□□□ 0.54
CCNA1P78396 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.41■□□□□ 0.54
CCNA1P78396 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 MIR6775-201ENST00000617557 69 ntBASIC18.41■□□□□ 0.54
CCNA1P78396 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.41■□□□□ 0.54
CCNA1P78396 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.41■□□□□ 0.54
CCNA1P78396 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.41■□□□□ 0.54
CCNA1P78396 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCNA1P78396 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCNA1P78396 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.4■□□□□ 0.54
CCNA1P78396 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CCNA1P78396 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.4■□□□□ 0.54
CCNA1P78396 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.4■□□□□ 0.54
CCNA1P78396 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.4■□□□□ 0.54
CCNA1P78396 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.4■□□□□ 0.54
CCNA1P78396 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 MIR4259-201ENST00000584466 101 ntBASIC18.4■□□□□ 0.54
CCNA1P78396 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.4■□□□□ 0.54
CCNA1P78396 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.4■□□□□ 0.54
CCNA1P78396 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CCNA1P78396 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNA1P78396 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCNA1P78396 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.39■□□□□ 0.54
CCNA1P78396 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCNA1P78396 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms