Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.07■□□□□ 0.16
PKNOX1P55347 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
PKNOX1P55347 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 AC005593.1-201ENST00000624894 515 ntBASIC16.07■□□□□ 0.16
PKNOX1P55347 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.07■□□□□ 0.16
PKNOX1P55347 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 AC013268.4-201ENST00000637413 2228 ntBASIC16.07■□□□□ 0.16
PKNOX1P55347 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.07■□□□□ 0.16
PKNOX1P55347 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PKNOX1P55347 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 RPS2P28-201ENST00000314255 741 ntBASIC16.06■□□□□ 0.16
PKNOX1P55347 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 AC018712.1-201ENST00000455767 687 ntBASIC16.06■□□□□ 0.16
PKNOX1P55347 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.06■□□□□ 0.16
PKNOX1P55347 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.06■□□□□ 0.16
PKNOX1P55347 AC012313.10-201ENST00000623509 926 ntBASIC16.06■□□□□ 0.16
PKNOX1P55347 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.06■□□□□ 0.16
PKNOX1P55347 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.06■□□□□ 0.16
PKNOX1P55347 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PKNOX1P55347 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PKNOX1P55347 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PKNOX1P55347 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.05■□□□□ 0.16
PKNOX1P55347 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PKNOX1P55347 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PKNOX1P55347 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.05■□□□□ 0.16
PKNOX1P55347 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.05■□□□□ 0.16
PKNOX1P55347 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.05■□□□□ 0.16
PKNOX1P55347 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.05■□□□□ 0.16
PKNOX1P55347 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms