Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
FOXA3P55318 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
FOXA3P55318 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.33□□□□□ -0.44
FOXA3P55318 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.33□□□□□ -0.44
FOXA3P55318 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
FOXA3P55318 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA3P55318 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 AC020658.6-201ENST00000623564 1870 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 AC007686.3-201ENST00000619017 3487 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 BAALC-202ENST00000306391 243 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 BAALC-204ENST00000330955 222 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA3P55318 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA3P55318 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.32□□□□□ -0.44
FOXA3P55318 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 GUSBP12-201ENST00000513727 720 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC12.32□□□□□ -0.44
FOXA3P55318 AL441883.1-201ENST00000566170 1045 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 PGM5P2-202ENST00000637225 1043 ntBASIC12.32□□□□□ -0.44
FOXA3P55318 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
FOXA3P55318 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.32□□□□□ -0.44
FOXA3P55318 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
FOXA3P55318 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
FOXA3P55318 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
FOXA3P55318 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
FOXA3P55318 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.31□□□□□ -0.44
FOXA3P55318 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
FOXA3P55318 CICP24-201ENST00000605464 2705 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms