Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.8■□□□□ 0.6
CTCFP49711 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.8■□□□□ 0.6
CTCFP49711 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 MPDU1-223ENST00000582151 728 ntBASIC18.8■□□□□ 0.6
CTCFP49711 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.8■□□□□ 0.6
CTCFP49711 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 AC026979.3-201ENST00000607315 403 ntBASIC18.8■□□□□ 0.6
CTCFP49711 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CTCFP49711 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CTCFP49711 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CTCFP49711 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.79■□□□□ 0.6
CTCFP49711 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.79■□□□□ 0.6
CTCFP49711 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.79■□□□□ 0.6
CTCFP49711 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 AP003419.4-201ENST00000616071 517 ntBASIC18.79■□□□□ 0.6
CTCFP49711 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC18.79■□□□□ 0.6
CTCFP49711 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CTCFP49711 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTCFP49711 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CTCFP49711 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTCFP49711 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CTCFP49711 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.78■□□□□ 0.6
CTCFP49711 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.78■□□□□ 0.6
CTCFP49711 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 HARS-202ENST00000415192 1401 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC18.78■□□□□ 0.6
CTCFP49711 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 AC007969.1-201ENST00000433675 447 ntBASIC18.78■□□□□ 0.6
CTCFP49711 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CTCFP49711 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 AC023310.1-201ENST00000554836 735 ntBASIC18.78■□□□□ 0.6
CTCFP49711 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.78■□□□□ 0.6
CTCFP49711 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.78■□□□□ 0.6
CTCFP49711 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.78■□□□□ 0.6
CTCFP49711 CYP2A7P1-201ENST00000595391 815 ntBASIC18.78■□□□□ 0.6
CTCFP49711 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.78■□□□□ 0.6
CTCFP49711 AL353726.2-201ENST00000623259 884 ntBASIC18.78■□□□□ 0.6
CTCFP49711 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTCFP49711 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms