Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SCN4AP35499 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 AC007274.2-201ENST00000421675 662 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 AC016700.1-201ENST00000429424 312 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 AC145423.3-201ENST00000615987 467 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
SCN4AP35499 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.88■□□□□ 0.61
SCN4AP35499 AP001582.1-201ENST00000525856 295 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.88■□□□□ 0.61
SCN4AP35499 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.88■□□□□ 0.61
SCN4AP35499 AC018635.2-201ENST00000608625 364 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 AP003419.4-201ENST00000616071 517 ntBASIC18.88■□□□□ 0.61
SCN4AP35499 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN4AP35499 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN4AP35499 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SCN4AP35499 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 CYP46A4P-201ENST00000414953 267 ntBASIC18.87■□□□□ 0.61
SCN4AP35499 AC136604.1-201ENST00000418535 575 ntBASIC18.87■□□□□ 0.61
SCN4AP35499 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 AC008267.1-201ENST00000474858 1069 ntBASIC18.87■□□□□ 0.61
SCN4AP35499 FGFR3P5-201ENST00000564496 886 ntBASIC18.87■□□□□ 0.61
SCN4AP35499 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN4AP35499 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 AL390961.4-201ENST00000623958 2535 ntBASIC18.87■□□□□ 0.61
SCN4AP35499 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN4AP35499 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SCN4AP35499 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SCN4AP35499 ACTBP8-201ENST00000403258 1108 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 AL355334.1-201ENST00000417713 215 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SCN4AP35499 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.86■□□□□ 0.61
SCN4AP35499 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 AC044849.1-201ENST00000519737 1188 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 AC126915.1-201ENST00000522847 1038 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.86■□□□□ 0.61
SCN4AP35499 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.86■□□□□ 0.61
SCN4AP35499 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.86■□□□□ 0.61
SCN4AP35499 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.86■□□□□ 0.61
SCN4AP35499 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SCN4AP35499 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms