Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
MSX1P28360 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 RN7SL832P-201ENST00000607781 1756 ntBASIC14.96□□□□□ -0.01
MSX1P28360 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 ALOX12P2-203ENST00000570921 1945 ntBASIC14.96□□□□□ -0.01
MSX1P28360 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 AL592309.1-201ENST00000443127 649 ntBASIC14.96□□□□□ -0.01
MSX1P28360 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX1P28360 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC14.96□□□□□ -0.01
MSX1P28360 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 KRT8P48-201ENST00000515599 1220 ntBASIC14.96□□□□□ -0.01
MSX1P28360 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX1P28360 AC099398.1-201ENST00000567919 2776 ntBASIC14.96□□□□□ -0.01
MSX1P28360 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.96□□□□□ -0.01
MSX1P28360 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX1P28360 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX1P28360 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
MSX1P28360 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
MSX1P28360 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX1P28360 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX1P28360 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX1P28360 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.96□□□□□ -0.02
MSX1P28360 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.96□□□□□ -0.02
MSX1P28360 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX1P28360 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.96□□□□□ -0.02
MSX1P28360 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX1P28360 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
MSX1P28360 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.96□□□□□ -0.02
MSX1P28360 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
MSX1P28360 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX1P28360 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX1P28360 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.95□□□□□ -0.02
MSX1P28360 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX1P28360 SPCS2P4-201ENST00000436160 681 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AC244107.1-201ENST00000442033 332 ntBASIC14.95□□□□□ -0.02
MSX1P28360 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 AC098859.1-201ENST00000502915 1238 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AC093214.1-201ENST00000511688 1107 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AC069262.1-201ENST00000539058 672 ntBASIC14.95□□□□□ -0.02
MSX1P28360 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.95□□□□□ -0.02
MSX1P28360 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 AL390955.2-201ENST00000603032 514 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AL365330.1-201ENST00000607459 531 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AC084121.4-201ENST00000641598 221 ntBASIC14.95□□□□□ -0.02
MSX1P28360 AF228730.8-201ENST00000642140 221 ntBASIC14.95□□□□□ -0.02
MSX1P28360 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.95□□□□□ -0.02
MSX1P28360 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
MSX1P28360 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
MSX1P28360 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms