Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 AL133267.1-201ENST00000398220 340 ntBASIC20.12■□□□□ 0.81
COL5A3P25940 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 MTX1P1-201ENST00000440904 838 ntBASIC20.12■□□□□ 0.81
COL5A3P25940 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A3P25940 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A3P25940 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.12■□□□□ 0.81
COL5A3P25940 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.12■□□□□ 0.81
COL5A3P25940 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL5A3P25940 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC20.12■□□□□ 0.81
COL5A3P25940 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20.12■□□□□ 0.81
COL5A3P25940 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.12■□□□□ 0.81
COL5A3P25940 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL5A3P25940 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A3P25940 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
COL5A3P25940 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL5A3P25940 CALR4P-201ENST00000431943 946 ntBASIC20.11■□□□□ 0.81
COL5A3P25940 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 AC009486.1-201ENST00000569860 813 ntBASIC20.11■□□□□ 0.81
COL5A3P25940 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.11■□□□□ 0.81
COL5A3P25940 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC20.11■□□□□ 0.81
COL5A3P25940 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A3P25940 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.11■□□□□ 0.81
COL5A3P25940 AL133373.2-201ENST00000623187 2828 ntBASIC20.11■□□□□ 0.81
COL5A3P25940 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL5A3P25940 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL5A3P25940 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.1■□□□□ 0.81
COL5A3P25940 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.1■□□□□ 0.81
COL5A3P25940 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
COL5A3P25940 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC20.1■□□□□ 0.81
COL5A3P25940 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.1■□□□□ 0.81
COL5A3P25940 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL5A3P25940 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.1■□□□□ 0.81
COL5A3P25940 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.1■□□□□ 0.81
COL5A3P25940 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC20.1■□□□□ 0.81
COL5A3P25940 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 AP001094.4-201ENST00000579008 2176 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 AC007613.1-201ENST00000572811 2597 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 REXO1L1P-202ENST00000608646 1974 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.1■□□□□ 0.81
COL5A3P25940 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.1■□□□□ 0.81
COL5A3P25940 AC093813.1-201ENST00000605066 256 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.1■□□□□ 0.81
COL5A3P25940 AL118558.3-201ENST00000607414 1079 ntBASIC20.1■□□□□ 0.81
COL5A3P25940 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A3P25940 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.1■□□□□ 0.81
COL5A3P25940 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
COL5A3P25940 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.09■□□□□ 0.81
COL5A3P25940 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.09■□□□□ 0.81
COL5A3P25940 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.09■□□□□ 0.81
COL5A3P25940 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC20.09■□□□□ 0.81
COL5A3P25940 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.09■□□□□ 0.81
COL5A3P25940 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.09■□□□□ 0.81
COL5A3P25940 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A3P25940 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A3P25940 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
COL5A3P25940 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms