Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
COL5A1P20908 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL5A1P20908 AGGF1P2-201ENST00000426656 2106 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 LINC01144-201ENST00000626198 1710 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 AC012441.1-201ENST00000446669 685 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 AP000812.2-201ENST00000538934 718 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.4■□□□□ 0.06
COL5A1P20908 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.4■□□□□ 0.06
COL5A1P20908 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.4■□□□□ 0.06
COL5A1P20908 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.4■□□□□ 0.06
COL5A1P20908 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 AL691432.1-201ENST00000596308 1422 ntBASIC15.4■□□□□ 0.06
COL5A1P20908 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL5A1P20908 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
COL5A1P20908 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
COL5A1P20908 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
COL5A1P20908 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.39■□□□□ 0.05
COL5A1P20908 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.39■□□□□ 0.05
COL5A1P20908 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
COL5A1P20908 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.39■□□□□ 0.05
COL5A1P20908 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL5A1P20908 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.39■□□□□ 0.05
COL5A1P20908 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.38■□□□□ 0.05
COL5A1P20908 AC134915.1-201ENST00000426461 574 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.38■□□□□ 0.05
COL5A1P20908 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.38■□□□□ 0.05
COL5A1P20908 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 FLJ38576-201ENST00000623820 2459 ntBASIC15.38■□□□□ 0.05
COL5A1P20908 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
COL5A1P20908 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL5A1P20908 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.38■□□□□ 0.05
COL5A1P20908 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms