Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A1P02462 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.61■□□□□ 0.73
COL4A1P02462 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A1P02462 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A1P02462 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 AC092658.1-201ENST00000505836 891 ntBASIC19.61■□□□□ 0.73
COL4A1P02462 SLED1-202ENST00000512051 380 ntBASIC19.61■□□□□ 0.73
COL4A1P02462 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A1P02462 AC233724.13-201ENST00000598383 410 ntBASIC19.61■□□□□ 0.73
COL4A1P02462 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
COL4A1P02462 AC093525.8-201ENST00000624099 1342 ntBASIC19.61■□□□□ 0.73
COL4A1P02462 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A1P02462 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 AL607033.1-201ENST00000623900 1599 ntBASIC19.61■□□□□ 0.73
COL4A1P02462 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A1P02462 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL4A1P02462 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A1P02462 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
COL4A1P02462 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A1P02462 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL4A1P02462 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A1P02462 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 CU634019.7-201ENST00000624153 1185 ntBASIC19.6■□□□□ 0.73
COL4A1P02462 AC005252.2-201ENST00000624630 1141 ntBASIC19.6■□□□□ 0.73
COL4A1P02462 FP236241.2-201ENST00000624906 1185 ntBASIC19.6■□□□□ 0.73
COL4A1P02462 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL4A1P02462 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.6■□□□□ 0.73
COL4A1P02462 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A1P02462 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A1P02462 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A1P02462 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL4A1P02462 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.6■□□□□ 0.73
COL4A1P02462 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A1P02462 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
COL4A1P02462 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A1P02462 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A1P02462 AC244669.2-201ENST00000612320 853 ntBASIC19.59■□□□□ 0.73
COL4A1P02462 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A1P02462 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A1P02462 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A1P02462 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A1P02462 AL162726.2-201ENST00000438986 1017 ntBASIC19.59■□□□□ 0.73
COL4A1P02462 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A1P02462 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A1P02462 TIMM17BP1-201ENST00000545713 516 ntBASIC19.59■□□□□ 0.73
COL4A1P02462 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A1P02462 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A1P02462 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.58■□□□□ 0.73
COL4A1P02462 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 REXO1L1P-202ENST00000608646 1974 ntBASIC19.58■□□□□ 0.73
COL4A1P02462 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A1P02462 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.58■□□□□ 0.72
COL4A1P02462 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
COL4A1P02462 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms