Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.26■□□□□ 0.99
COL3A1P02461 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
COL3A1P02461 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 AL607033.1-201ENST00000623900 1599 ntBASIC21.25■□□□□ 0.99
COL3A1P02461 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
COL3A1P02461 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 AC112504.1-201ENST00000623415 1841 ntBASIC21.25■□□□□ 0.99
COL3A1P02461 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.25■□□□□ 0.99
COL3A1P02461 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC21.25■□□□□ 0.99
COL3A1P02461 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.25■□□□□ 0.99
COL3A1P02461 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 DOC2GP-202ENST00000514950 1163 ntBASIC21.25■□□□□ 0.99
COL3A1P02461 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC21.25■□□□□ 0.99
COL3A1P02461 AC140912.1-201ENST00000577171 1054 ntBASIC21.25■□□□□ 0.99
COL3A1P02461 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
COL3A1P02461 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC21.25■□□□□ 0.99
COL3A1P02461 AC025048.6-201ENST00000634326 1161 ntBASIC21.25■□□□□ 0.99
COL3A1P02461 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL3A1P02461 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL3A1P02461 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
COL3A1P02461 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL3A1P02461 PIN1P1-201ENST00000412108 996 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 DFFBP1-201ENST00000433250 979 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 PHKG1P2-201ENST00000457537 863 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.24■□□□□ 0.99
COL3A1P02461 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL3A1P02461 AC093004.1-201ENST00000508850 424 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 SLED1-202ENST00000512051 380 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 AC055876.2-201ENST00000531834 546 ntBASIC21.24■□□□□ 0.99
COL3A1P02461 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.24■□□□□ 0.99
COL3A1P02461 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.24■□□□□ 0.99
COL3A1P02461 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.24■□□□□ 0.99
COL3A1P02461 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL3A1P02461 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
COL3A1P02461 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.24■□□□□ 0.99
COL3A1P02461 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL3A1P02461 FLII-221ENST00000578558 2377 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
COL3A1P02461 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
COL3A1P02461 AC098850.1-201ENST00000419919 790 ntBASIC21.23■□□□□ 0.99
COL3A1P02461 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC21.23■□□□□ 0.99
COL3A1P02461 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 AL662799.1-202ENST00000614205 422 ntBASIC21.23■□□□□ 0.99
COL3A1P02461 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 AF228730.6-201ENST00000641497 218 ntBASIC21.23■□□□□ 0.99
COL3A1P02461 AC084121.3-201ENST00000641716 218 ntBASIC21.23■□□□□ 0.99
COL3A1P02461 AC105233.6-201ENST00000642093 218 ntBASIC21.23■□□□□ 0.99
COL3A1P02461 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC21.23■□□□□ 0.99
COL3A1P02461 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.23■□□□□ 0.99
COL3A1P02461 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms