Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NPHP1O15259 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NPHP1O15259 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 MIR658-201ENST00000385210 100 ntBASIC20.52■□□□□ 0.88
NPHP1O15259 MIR1909-201ENST00000411312 80 ntBASIC20.52■□□□□ 0.88
NPHP1O15259 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
NPHP1O15259 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP1O15259 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.52■□□□□ 0.88
NPHP1O15259 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP1O15259 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP1O15259 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.52■□□□□ 0.88
NPHP1O15259 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP1O15259 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.52■□□□□ 0.88
NPHP1O15259 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.52■□□□□ 0.88
NPHP1O15259 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP1O15259 MIR6799-201ENST00000620297 69 ntBASIC20.52■□□□□ 0.88
NPHP1O15259 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP1O15259 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
NPHP1O15259 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP1O15259 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP1O15259 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP1O15259 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.52■□□□□ 0.87
NPHP1O15259 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC20.52■□□□□ 0.87
NPHP1O15259 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP1O15259 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 SLC7A15P-201ENST00000424028 1363 ntBASIC20.51■□□□□ 0.87
NPHP1O15259 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP1O15259 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NPHP1O15259 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NPHP1O15259 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.51■□□□□ 0.87
NPHP1O15259 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP1O15259 AL033527.5-202ENST00000641632 1098 ntBASIC20.51■□□□□ 0.87
NPHP1O15259 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.51■□□□□ 0.87
NPHP1O15259 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.51■□□□□ 0.87
NPHP1O15259 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NPHP1O15259 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP1O15259 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP1O15259 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP1O15259 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NPHP1O15259 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NPHP1O15259 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP1O15259 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 TTTY23B-201ENST00000442790 549 ntBASIC20.5■□□□□ 0.87
NPHP1O15259 MYCLP2-201ENST00000449268 967 ntBASIC20.5■□□□□ 0.87
NPHP1O15259 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.5■□□□□ 0.87
NPHP1O15259 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.5■□□□□ 0.87
NPHP1O15259 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.5■□□□□ 0.87
NPHP1O15259 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.5■□□□□ 0.87
NPHP1O15259 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.5■□□□□ 0.87
NPHP1O15259 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP1O15259 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP1O15259 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NPHP1O15259 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP1O15259 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NPHP1O15259 AC008894.3-201ENST00000624324 3103 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms